Grey White Mask

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

2D to 3D
Anatomist Show Grey White on T1 MRI
Cortex Topological Correction
Cortical Folds Graph
Grey White Classification
Hemi Surfaces and Sulci Extraction
Hemisphere Cortical Folds Graph
Hemisphere Grey White Topological Correction
Hemisphere Pial Mesh
Hemisphere Sulci Skeleton
Hemisphere Sulci Thickness and Volumes
Import MNI CIVET Segmentation
Pial Mesh
Prepare For Morphologist
Sulci Skeleton
Surfaces and Sulci Extraction
{Viewer} Grey White Mask

Associated formats

Aperio svs
BMP image
BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIF image
GIS image
gz compressed ECAT i image
gz compressed ECAT v image
gz compressed GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
gz compressed SPM image
gz compressed VIDA image
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
JPEG image
Leica scn
MINC image
NIFTI-1 image
PBM image
PGM image
PNG image
PPM image
Sakura svslide
SPM image
TIFF image
TIFF(.tif) image
Ventana bif
VIDA image
XBM image
XPM image
Z compressed ECAT i image
Z compressed ECAT v image
Z compressed GIS image
Z compressed SPM image
Z compressed VIDA image
Zeiss czi

Associated ontology rules

  • brainvisa-3.2.0 :
    • {center}/{subject}/anatomical_mri/{acquisition}/{analysis}/segmentation/left/grey_white_<side>_<subject>
    {center}/{subject}/anatomical_mri/{acquisition}/{analysis}/segmentation/right/grey_white_<side>_<subject>

    Key attributes

  • brainvisa-3.0 :
    • protocol ,  subject ,  filename_variable ,  acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis ,  side
  • brainvisa-3.2.0 :
    • time_duration ,  acquisition_date ,  time_point ,  rescan ,  center ,  subject ,  acquisition ,  analysis ,  side ,  contrast ,  mapped
  • morphologist-bids-1.0 :
    • time_duration ,  acquisition_date ,  time_point ,  rescan ,  subject ,  session ,  acquisition ,  analysis